BtaEX6008581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021466 | COL3A1
Description
collagen alpha-1(III) chain precursor [Source:RefSeq peptide;Acc:NP_001070299]
Coordinates
chr2:7328990-7330860:-
Coord C1 exon
chr2:7330753-7330860
Coord A exon
chr2:7330489-7330542
Coord C2 exon
chr2:7328990-7329043
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATTGTTTTTTATTTGACAGGGT
3' ss Score
7.89
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTGCTGCTGGTCCCCCTGGGCCACCTGGTTCTGCTGGTACACCTGGTCTGCAAGGAATGCCTGGAGAAAGAGGGGGTCCTGGAGGCCCTGGTCCAAAGGGTGATAAG
Seq A exon
GGTGAGCCTGGCAGCTCAGGTGTCGATGGTGCTCCAGGGAAAGATGGTCCACGG
Seq C2 exon
GGTCCCACTGGTCCCATTGGTCCTCCTGGCCCAGCTGGTCAGCCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021466-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=13.9)
A:
PF0139113=Collagen=PU(7.3=33.3)
C2:
PF0139113=Collagen=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGTTCTGCTGGTACAC
R:
CTTATCTCCAGGCTGACCAG
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]