RnoEX0023188 @ rn6
Exon Skipping
Gene
ENSRNOG00000003357 | Col3a1
Description
collagen type III alpha 1 chain [Source:RGD Symbol;Acc:71029]
Coordinates
chr9:52047737-52048745:+
Coord C1 exon
chr9:52047737-52047844
Coord A exon
chr9:52048089-52048142
Coord C2 exon
chr9:52048692-52048745
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATTTGCTTTTGAATGGCAGGGT
3' ss Score
5.35
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGCCCTGCTGGTCCCCCTGGTCCCCCTGGTACTTCTGGTCCTCCTGGTCTGCAAGGGATGCCAGGAGAGAGAGGAGGTCCTGGGAGTCCTGGCCCAAAGGGTGAAAAG
Seq A exon
GGTGAGCCAGGCGGTGCGGGTGCTGATGGAGTTCCAGGAAAGGATGGGCCGAGA
Seq C2 exon
GGTCCTGCTGGTCCTATTGGTCCCCCTGGCCCAGCTGGTCAGCCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003357-'47-38,'47-37,48-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCCCCTGGTACTTCTG
R:
CTGACCAGCTGGGCCAGG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]