BtaEX6008942 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21794399-21799255:+
Coord C1 exon
chr2:21794399-21794577
Coord A exon
chr2:21796074-21796188
Coord C2 exon
chr2:21799169-21799255
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTTGTTTTCCTTAGTCC
3' ss Score
10.39
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCTTTACAAGTTCCCAATGTGCTGCTTACAAGTTCTGACTCAAGTGTCATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCGTCCTCCAACAGGCCAATTGT
Seq A exon
TCCTGTACCAGGCCCATTTCCTCTTCTCTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATCACAAGTTCTAATGTGCATGTTCCAGCTGCAGTTCCA
Seq C2 exon
CTTGTTCGACCAGTCACCATGGTGCCTAGCGTTCCAGGAATTCCAGGTCCTTCCTCTCCTCAACCAGTGCAGTCAGAAGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295-'14-20,'14-17,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.654 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGCACAGCCCACATCAG
R:
TGCTTCTGACTGCACTGGTTG
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]