GgaEX7005958 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16179194-16180031:+
Coord C1 exon
chr7:16179194-16179372
Coord A exon
chr7:16179665-16179779
Coord C2 exon
chr7:16179945-16180031
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACACGTAATTCCTTTTTCAGTCC
3' ss Score
7.65
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GAAGTGTCCCTGCAGCAGACTGCACAGCCCACATCAACAATAGTTCGTCCAGCATCGCTACAGGTTCCTAACGTACTACTTACAAGTTCTGACTCAAGTGTTATTATTCAGCAGGCAATACCATCACCAACGTCTAGTACTGTTATTACCCAGGCTCCATCCTCTAACAGACCAATAGT
Seq A exon
TCCAGTTCCAGGCCCGTTTCCTCTGCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCTATTACAAATTCCAACGTGCATGTCCCTGCTGCAGTTCCA
Seq C2 exon
CTTGTTAGACCTGTCACCATGGTGCCTAGTATCCCAGGAATCCCAGGGCCTTCCTCCCCACAGCCAGTGCAGTCTGAGGCTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'13-21,'13-19,14-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.923 C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGCCCACATCAACAAT
R:
TTTAGCCTCAGACTGCACTGG
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]