BtaEX6009044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24527589-24538455:-
Coord C1 exon
chr2:24538364-24538455
Coord A exon
chr2:24529732-24529889
Coord C2 exon
chr2:24527589-24527738
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACGTCTATTTCTGCTCCCAGGTT
3' ss Score
8.83
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATACTTGAAGCCTCTGAAACATCCCATAACTTCGAATTGATGGCACTGTGCAGGGTAAAAGTGCTGCCCTGGAAACGTACAATGAAACAGAG
Seq A exon
GTTGTCATAGGATTTTCTCGTCACCACTCAATCATATCTACTTACACACACAGTCAACCAGTCAACAAAGAAGAAATTTCTTTTTCCGGAGACAAAGAGAGATTTCCCACAATATAGTTTTGCCGGCTGCAGTTTCTTCAGCTCATCCAGTCCCGAAG
Seq C2 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGAATTGTACCCGACTGGGGAGACAGCATAGAAGTTAAGAATGAAGATCAGATTCAAGGGCTTCTCCAGGCTTGTCAGCTGGCCCGACATGTCCTCCTCTTGGCCGGGAAGAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075-'6-5,'6-3,7-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0055719=Peptidase_M24=PU(9.2=42.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTTGAAGCCTCTGAAACATCCC
R:
CTTTAAACTCTTCCCGGCCAAGA
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]