MmuEX0028692 @ mm9
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71291333-71347947:+
Coord C1 exon
chr2:71291333-71291455
Coord A exon
chr2:71344842-71344999
Coord C2 exon
chr2:71347798-71347947
Length
158 bp
Sequences
Splice sites
3' ss Seq
TACTCTATTTCTGCTCACAGGTT
3' ss Score
8.73
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCAGCGCTTCTGGGCTTTGAGAGCGCGGCTACTCCAGTGGGCGGAGCTGCGAGGCTCTCTTGGCCACGTGACCGGAGCCAACATGGCGGCGCCCATCGGCGTCCCCCTGCTCGTCCGTGGAG
Seq A exon
GTTGTCAGAGAATTCTGTCTTCGCCACTCAATCATATCTACTTACACAAGCGGTCAGGCAGTCAACAAAGAAGACATTTCTTTTTCTGGAGACAAAGGGATATCTCCCACAGTGTGGTTTCACCGGCTGCCGTCTCTCCCGCACATCCTGTCCCCAAG
Seq C2 exon
CGCATAAAGAAGCCAGACTACGTGACGACAGGCATTGTGCCGGACTGGGGAGACAGCATAGAAGTGAAGGATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGAGACACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0055719=Peptidase_M24=PU(13.3=42.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGAGCGCGGCTACTC
R:
AAACTCTTCCCAGCCAGGAGG
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: