DreEX6031990 @ danRer10
Exon Skipping
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30142300-30152319:+
Coord C1 exon
chr1:30142300-30142358
Coord A exon
chr1:30151926-30152092
Coord C2 exon
chr1:30152170-30152319
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTCCCTTTGTGCAGGTG
3' ss Score
10.33
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GACCTCTTCTGTGGGAAACATGGCTGCGCCCTGTGCAGCTCAGTGCTTATACAGAACAG
Seq A exon
GTGGCTTAAGGCTGCTACAGAGAATTTCAAGGCTACCTCACTGCCACAAAGATGCATCTTTGGCCCACCAGTGCCAATTTCACCGATCTTTCTTCTGGAGGAAGCCAAAAACTTCCCACAGTGTAGTCCGGCCTGCCATAGTGCGCCCAGCTTATCCCGTACCCAAG
Seq C2 exon
CACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715-'0-3,'0-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0055719=Peptidase_M24=PU(25.9=42.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTCTGTGGGAAACATGG
R:
ACTGTTTCCTGTCAGCAGCAG
Band lengths:
202-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]