BtaEX6009313 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044179 | CERS6
Description
Bos taurus ceramide synthase 6 (CERS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001193132]
Coordinates
chr2:27467086-27489317:-
Coord C1 exon
chr2:27489267-27489317
Coord A exon
chr2:27486819-27486911
Coord C2 exon
chr2:27467086-27467214
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTTGATCCTCAGCCA
3' ss Score
7.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGCCCTGGCTGTGGAATACAAAGCATTGCTGGTACAACTACCCCTATCAG
Seq A exon
CCACTCACACCTGACCTTCACTACTATTATATCCTGGAGCTGTCGTTTTATTGGTCTTTAATGTTTTCCCAGTTCACTGATATCAAAAGAAAG
Seq C2 exon
GACTTTGCCGTTATGTTCCTGCACCACCTTGTAGCTATTCTCTTGATTACCTTTTCATATGTCAACAACATGGCCCGAGTAGGGACCCTGATCCTCTGTCTCCACGATTCAGCCGATGCTCTTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044179-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGCTGTGGAATACAAA
R:
CATCGGCTGAATCGTGGAGAC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]