GgaEX6042475 @ galGal4
Exon Skipping
Gene
ENSGALG00000010902 | CERS6
Description
ceramide synthase 6 [Source:HGNC Symbol;Acc:HGNC:23826]
Coordinates
chr7:18466702-18474367:-
Coord C1 exon
chr7:18474317-18474367
Coord A exon
chr7:18472140-18472232
Coord C2 exon
chr7:18466702-18466830
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTTCATCTTTCAGCCA
3' ss Score
9.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACACCCTGGCTTTGGAATACCAGACAGTGCTGGAATGGTTACCCATATCAG
Seq A exon
CCACTGATGCCTGACCTTCATTATTACTACATTGCTGAATTATCATTCTACTGGTCCTTAATGTTTTCTCAATTCATTGACATCAAAAGAAAG
Seq C2 exon
GATTTTGGCATCATGTTTACACATCACATTGTAACAGTCACCCTGATAACCTTCTCATATGTAACCAATTTGACACGAGTGGGAACCCTGACCTTATGTCTCCATGATGCGGCTGATGTTGTCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'7-12,'7-9,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGGCTTTGGAATACC
R:
AACATCAGCCGCATCATGGAG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]