GgaEX6042475 @ galGal3
Exon Skipping
Gene
ENSGALG00000010902 | E1C4X9_CHICK
Description
NA
Coordinates
chr7:20434830-20442495:-
Coord C1 exon
chr7:20442445-20442495
Coord A exon
chr7:20440268-20440360
Coord C2 exon
chr7:20434830-20434958
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTTCATCTTTCAGCCA
3' ss Score
9.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACACCCTGGCTTTGGAATACCAGACAGTGCTGGAATGGTTACCCATATCAG
Seq A exon
CCACTGATGCCTGACCTTCATTATTACTACATTGCTGAATTATCATTCTACTGGTCCTTAATGTTTTCTCAATTCATTGACATCAAAAGAAAG
Seq C2 exon
GATTTTGGCATCATGTTTACACATCACATTGTAACAGTCACCCTGATAACCTTCTCATATGTAACCAATTTGACACGAGTGGGAACCCTGACCTTATGTCTCCATGATGCGGCTGATGTTGTCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGGCTTTGGAATACC
R:
AACATCAGCCGCATCATGGAG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]