BtaEX6009519 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34678320-34689251:-
Coord C1 exon
chr2:34689105-34689251
Coord A exon
chr2:34681448-34681548
Coord C2 exon
chr2:34678320-34678494
Length
101 bp
Sequences
Splice sites
3' ss Seq
AACAAAAACACTTCCCACAGGAG
3' ss Score
5.03
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGTTTCATGATGTTGCTTACAAAGCAAAAGATCGTAATGACTTGGTGTCAGGAATTGACGAATTTCTGGATCAGGTGACTGTCCTTCCTCCCGGAGAGTGGGACCCAAGCATTCGAATAGAGCCTCCCAAAAATGTTCCTTCCCAG
Seq A exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGGGAAGCTGAGCCCCATGGAGGACATAGTGGACCTGAACTCCAGCGAACTGGAAG
Seq C2 exon
GCTTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCACAGATGCTCTCAGCCTGCAGTGTTTAGCGTCTTTTCTGTTTCTCTACTGCGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCAACTGAGGGTCGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'11-15,'11-13,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.853 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(12.4=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
C2:
PF0095516=HCO3_cotransp=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCTTCCTCCCGGAG
R:
TCGACCCTCAGTTGCTTCTCC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]