RnoEX0082776 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48211862-48220582:+
Coord C1 exon
chr3:48211862-48212008
Coord A exon
chr3:48217221-48217321
Coord C2 exon
chr3:48220408-48220582
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCCACAAAAACTCCCTGCAGGAG
3' ss Score
5.98
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTTTCATGATGTTGCTTATAAAGCTAAAGACCGCAATGACTTGGTGTCAGGAATTGATGAGTTTCTGGATCAGGTTACCGTTCTTCCTCCTGGAGAATGGGACCCAAGCATACGAATAGAACCTCCCAAAAATGTTCCTTCCCAG
Seq A exon
GAGAAGAGGAAGACTCCTTCTCTACCAAATGGAACAGCGGCTCATGGCGGACCTGAGCAACATGGAGGACACAGTGGACCTGAGCTCCAGCGGACTGGGAG
Seq C2 exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGGAAGGCTCCGTTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCATTCCTGTTTCTCTACTGTGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCCACCGAAGGTCGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'19-27,'19-25,21-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.869 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(12.5=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGCAATGACTTGGTGTC
R:
TGACAGGAGACATACATGCACA
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]