DreEX6038706 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51791948-51804357:-
Coord C1 exon
chr9:51804211-51804357
Coord A exon
chr9:51797209-51797303
Coord C2 exon
chr9:51791948-51792122
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGATAAAAACAGGAG
3' ss Score
4.95
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTGTTCCATGATGTGGCCTATAAAGCTAAAGACCGCAATGATCTGATTGCTGGGATTGATGAATTTCTGGACCAAGTGACAGTTCTGCCTCCAGGAGAATGGGATCCTTCCATCAGGATAGAGCCGCCAAAAAATGTCCCGTCTCAG
Seq A exon
GAGAAGAGAAAGATCCCCGCGGTGCCTAATGGAGAGCTGGCAGAGACGGAGGAACATGGTGGACACGGAGGCCCTGAGCTGCAGCGCACCGGGAG
Seq C2 exon
GTTATTTGGTGGATTAATTCTGGATGTGAAGCGGAAGGCTCCACACTTGCTGTCAGATTTCGGAGATGCGCTGAGCCTGCAGTGTCTGGCCTCTTTCCTGTTCCTGTACTGCGCCTGCATGTCTCCTGTGATCACCTTCGGAGGGCTGCTGGGAGAAGCAACAGAGGGACGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.844 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.9=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=18.8)
C2:
PF0095516=HCO3_cotransp=PU(11.4=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGACAGTTCTGCCTCC
R:
ACAGGAAAGAGGCCAGACACT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]