BtaEX6009526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34606009-34617751:-
Coord C1 exon
chr2:34617590-34617751
Coord A exon
chr2:34607267-34607518
Coord C2 exon
chr2:34606009-34606077
Length
252 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTTCTCTTAACAGAAA
3' ss Score
11.79
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCCACAAGAGATGATCGTGGCTGGTTTGTTACACCTTTAGGTCCAAATCCATGGTGGACAGTAATAGCTGCTATTATTCCAGCTTTACTTTGTACTATTCTAATTTTTATGGACCAACAGATTACAGCTGTCATTATCAACAGAAAAGAACATAAGCTAAAG
Seq A exon
AAAGGTTGTGGGTACCATCTGGATCTGTTAATGGTGGCTGTCATGCTGGGTGTGTGCTCCATCATGGGCCTGCCATGGTTTGTGGCTGCCACTGTCCTTTCCATCACTCATGTCAACAGCCTGAAACTGGAATCTGAATGTTCAGCTCCAGGAGAACAACCCAAATTTCTTGGCATTCGGGAGCAAAGAGTTACTGGGCTTATGATTTTCATTCTCATGGGCTCATCAGTCTTTATGACTAGTATTCTGAAG
Seq C2 exon
TTTATTCCTATGCCAGTGCTATATGGAGTGTTTCTTTATATGGGTGCTTCGTCACTAAAAGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(16.1=100)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAAGAGATGATCGTGGC
R:
AATTCCTTTTAGTGACGAAGCACC
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]