DreEX6038710 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51774247-51779845:-
Coord C1 exon
chr9:51779684-51779845
Coord A exon
chr9:51775728-51775979
Coord C2 exon
chr9:51774247-51774315
Length
252 bp
Sequences
Splice sites
3' ss Seq
ATGATGTGTTTCTCCTGCAGAAG
3' ss Score
10.69
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
CCAACTCGTGATGATCGTGGGTGGCTGATTAGCCCGTTAGGTCCAAACCCGTGGTGGACGTGTGTGATCACAGTCATTCCTGCTCTTCTGTGCACCATCCTCATCTTCATGGACCAGCAGATCACAGCCGTCATCATCAACCGGAAAGAGCACAAGCTGAAG
Seq A exon
AAGGGCTGTGGGTATCATCTGGACCTGTTTATGGTGGGTGTGATGCTGGGCGTTTGCTCTATTATGGGCCTGCCATGGTTTGTGGCGGCGACCGTCCTGTCCATCTCTCATGTCAACAGTCTGAAGCTGGAGTCCGAGTGCTCGGCGCCTGGAGAACAGCCCAAATTCCTGGGCATCAGAGAGCAGCGGGTCACTGGACTCATGATCTTCCTCCTCATGGGCTGCTCTGTATTCATGACCTCCGTGCTGAAG
Seq C2 exon
TTCATTCCAATGCCGGTTCTGTATGGAGTTTTCCTGTACATGGGTGCGTCTTCACTGAGAGGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'17-18,'17-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(16.1=100)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTCGTGATGATCGTGGG
R:
TATTCCTCTCAGTGAAGACGCAC
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]