GgaEX1053550 @ galGal3
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22773221-22777094:-
Coord C1 exon
chr7:22776933-22777094
Coord A exon
chr7:22774553-22774804
Coord C2 exon
chr7:22773221-22773289
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTAAAACAGAAA
3' ss Score
8.24
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCCACCAGAGATGATCGTGGATGGTTTATTACTCCTTTGGGGCCTAATCCTTGGTGGACAGTGATAGCTGCTGTAATTCCAGCCCTGCTTTGTACTATCCTTATTTTTATGGACCAGCAGATTACAGCTGTCATTATAAACAGAAAAGAGCATAAACTAAAG
Seq A exon
AAAGGGTGTGGATACCATCTCGACTTACTCATGGTGGCAGTCATGCTTGGAGTGTGTTCCATTATGGGATTGCCATGGTTTGTTGCAGCCACTGTCCTCTCTATTTCTCATGTGAACAGCTTAAAACTGGAATCAGAGTGTTCTGCTCCAGGGGAACAGCCAAAATTTCTTGGAATCCGGGAGCAGAGAGTCACAGGGCTCATGATTTTTGTACTTATGGGCTCATCTGTCTTTTTGACAAGTATCCTGAAG
Seq C2 exon
TTTATCCCTATGCCAGTACTTTACGGAGTATTCCTTTACATGGGTGCTTCATCTCTAAAGGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(16.1=100)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCAGAGATGATCGTGGA
R:
AATTCCCTTTAGAGATGAAGCACCC
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]