BtaEX6009724 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003650 | NR4A2
Description
Bos taurus nuclear receptor subfamily 4, group A, member 2 (NR4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076208]
Coordinates
chr2:40011973-40014330:+
Coord C1 exon
chr2:40011973-40012838
Coord A exon
chr2:40013623-40013752
Coord C2 exon
chr2:40014167-40014330
Length
130 bp
Sequences
Splice sites
3' ss Seq
TATATTGTCTCCTTTTGCAGCGC
3' ss Score
10.74
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACAAGCCCTCCTCGCCCCCGACGCCCACCACCCCGGGCTTCCAGGTGCAGCACAGCCCCATGTGGGACGACCCAGGCTCCCTCCACAACTTCCACCAGAACTACGTGGCCACTACCCACATGATCGAACAGAGGAAAACGCCGGTCTCCCGCCTTTCCCTCTTCTCCTTTAAGCAGTCGCCCCCCGGAACCCCCGTGTCTAGCTGCCAGATGCGCTTCGATGGGCCCCTGCACGTCCCCATGAACCCGGAGCCAGCGGGCAGCCACCACGTGGTGGACGGGCAGACCTTCGCCGTGCCCAACCCCATCCGAAAGCCCGCGTCCATGGGCTTCCCTGGCCTGCAGATCGGCCACGCGTCGCAGCTGCTCGATACGCAGGTGCCCTCCCCGCCGTCGCGGGGCTCCCCCTCCAATGAAGGGCTGTGCGCTGTGTGCGGTGACAACGCGGCCTGCCAGCACTACGGCGTGCGCACCTGTGAGGGCTGCAAAGGGTTCTTTAAG
Seq A exon
CGCACGGTGCAAAAAAACGCGAAATACGTGTGTTTAGCAAATAAAAACTGCCCAGTGGACAAGCGGCGCAGGAATCGCTGTCAGTACTGCCGGTTTCAGAAGTGCCTGGCTGTTGGGATGGTCAAAGAAG
Seq C2 exon
TGGTTCGCACCGACAGTTTAAAAGGCCGGAGAGGTCGTTTACCTTCCAAACCGAAGAGCCCGCAGGAGCCCTCTCCCCCTTCGCCCCCGGTGAGTCTGATCAGTGCCCTCGTCAGGGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003650-'8-5,'8-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.000 C2=0.473
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.4)
A:
PF0010513=zf-C4=PD(58.6=93.2)
C2:
PF0010425=Hormone_recep=PU(0.5=1.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCCATCCGAAAGCCC
R:
TAAACGACCTCTCCGGCCTTT
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]