GgaEX6043342 @ galGal4
Exon Skipping
Gene
ENSGALG00000012538 | NR4A2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7981]
Coordinates
chr7:35534359-35536167:-
Coord C1 exon
chr7:35535302-35536167
Coord A exon
chr7:35534603-35534732
Coord C2 exon
chr7:35534359-35534522
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGTCCCGTCCCGCCCCGCAGCGC
3' ss Score
10.63
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACAAGCCCTCGTCGCCCCCGACCCCTTCCACGCCCGGCTTCCAGGTGCAGCACGGCCCCGTGTGGGACGACGCCGGCTCCCTGCACAACTTCCACCCCAACTACGTGGCCACCACGCACATGATCGAGCAGCGCAAAGCGCCCGTCTCCCGCCTCTCGCTCTTTTCCTTCAAGCAGTCCCCCCCCGGCACTCCCGTCTCCAGCTGCCAGATGCGCTTCGACGGGCCCCTCCACGTGCCCATGAACGCGGAGCCGGCAGGCCCCCACCACGGCGTGGACGGGCAGCCCTTCGCCGTGCCGAGCCCCATCCGCAAGCAGCCGGCCATGGCCTTCCCCGGGCTGCCGCTGGGCCACGCGCCGCAGCTGCTGGACAGCCAGGTGCCGTCGCCGCCCTCGCGGGGGTCCCCGTCCAACGAGGGGCTCTGCGCCGTCTGCGGGGACAACGCTGCCTGCCAGCACTACGGCGTGCGCACCTGCGAGGGCTGCAAGGGCTTCTTCAAG
Seq A exon
CGCACGGTGCAGAAGAACGCCAAATACGTGTGCCTGGCCAACAAGAACTGCCCGGTGGACAAACGCCGCCGGAACCGCTGCCAGTACTGCCGCTTCCAGAAGTGCCTGGCCGTCGGCATGGTGAAGGAGG
Seq C2 exon
TGGTTCGCACAGACAGCCTCAAAGGCCGGAGGGGTCGCTTGCCATCCAAACCGAAGAGCCCCCAGGAGCCCTCTCCCCCCTCTCCCCCGGTGAGTCTGATCAGTGCGCTGGTGAGAGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012538-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.000 C2=0.473
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.4)
A:
PF0010513=zf-C4=PD(58.6=93.2)
C2:
PF0010425=Hormone_recep=PU(0.5=1.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAACGAGGGGCTCT
R:
CTGGTCATAGCCGGGTTGGAG
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]