DreEX6021005 @ danRer10
Exon Skipping
Gene
ENSDARG00000044532 | nr4a2b
Description
nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
Coordinates
chr6:12228007-12229901:+
Coord C1 exon
chr6:12228007-12228857
Coord A exon
chr6:12229508-12229637
Coord C2 exon
chr6:12229738-12229901
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATGTGCTGTTTCTCCATAGCGC
3' ss Score
11.33
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATACCGGAGCTATATACTATAAACCATCCACTCCAAACATCTCCCAGTCCCCCAGTTACCCAACGGCTCCACATCATACGTGGGAAGACACCGGATCCCTTCACAGCTTTCACCAGAACTACCTGGCGACGTCACATATTATGGACCAGCAGCGGAAAAACGCGATGTCTCGGTTATTCTCGTTCAAGCAGTCTCCGGTTGACACGCCGATGCCAAGCTGCCAGATGCGCTTCGATGGATCCCTGCACGTGTCCATGGGCCCGGACACCGCACATCGCGCGCTGGACAGTTTTGCTTTGCCGGCTCCTCCGAGGAAACAGCACGGTGTGGGTTTATCCCATTCCCTAAACGTCGGGCACCCCTTACTGGAAAGCCCGGTGGCATCACCGCAGGCTAGAGGATCTCCGTCCAGCGAGGGTTTGTGCGCTGTGTGCGGGGACAACGCAGCCTGTCAGCACTACGGAGTGCGCACATGCGAGGGGTGCAAAGGATTCTTTAAG
Seq A exon
CGCACGGTGCAGAAAAACGCCAAATACGTTTGTCTGGCGAACAAAAACTGTCCTGTGGACAAAAGACGGCGAAATCGATGCCAATATTGCCGTTTTCAAAAGTGCCTGGTCGTTGGGATGGTAAAGGAAG
Seq C2 exon
TTGTCAGAACCGCCAGCTTAAAAGGTCGAAGAGGTCGCCTCCCCTCCAAACCTAAAAGTCCGCAGGATATCCCTGTCTCTTTCACACCCGTCAATCTCCTGAACGCACTAGTGAGAGCGCACATAGACTCCAACCCCTCCATGGCCCGTCTGGACTACTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044532-'3-5,'3-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.5)
A:
PF0010513=zf-C4=PD(58.6=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTAGAGGATCTCCGTCC
R:
TGGAGTCTATGTGCGCTCTCA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]