BtaEX6009782 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44735247-44737242:+
Coord C1 exon
chr2:44735247-44735351
Coord A exon
chr2:44735954-44736046
Coord C2 exon
chr2:44737150-44737242
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCTAATTCTGAATACCCAGGTT
3' ss Score
3.94
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTCCAATACCAGTATGACCTTAAAAACAGTAAAGGAAAAATTACAGTTGTTCAAGACACGCCAGAAATACTGCGTGTAAAAGAAAATCAAAAGAATTTCAGCTCG
Seq A exon
GTTTTATATAAAGAGGATGTCTCACCAGGAACAGCAATTGGAAAGACACCTGAGATGATGAGAGTGAAGCAAACCCAGGACCACATTAGCTCG
Seq C2 exon
GTGAAGTATAAGGAGGTGATTGGACAAGGAACGCCCATCCCAGACCTGCCTGAAGTGAAGCGGGTCAAGCAGACACAGAAGCACATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'161-167,'161-166,162-167=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.613 C2=0.548
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
A:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(69.6=51.6)
C2:
PF0088013=Nebulin=PD(21.7=16.1),PF0088013=Nebulin=PU(64.0=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATACCAGTATGACCTTAAAAACA
R:
CTTGACCCGCTTCACTTCAGG
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]