GgaEX0018898 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34691191-34694411:-
Coord C1 exon
chr7:34694307-34694411
Coord A exon
chr7:34693390-34693482
Coord C2 exon
chr7:34691191-34691283
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTGATTCTAAATGTTAAGATT
3' ss Score
2.31
5' ss Seq
TCGGTACAA
5' ss Score
2.47
Exon sequences
Seq C1 exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
Seq A exon
ATTTTGTATAAAGAAGATATTGGAACTGGAACTACTATTGAAAAGACGCCAGAGATGCAGAGAGTTAAAAGAACCCAGGATGCAATTAGCTCG
Seq C2 exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-24/33=23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.645 C2=0.631
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(59.3=45.7)
A:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Main Inclusion Isoform:
ENSGALT00000020417fB2253
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGACCTACAGAACAGT
R:
ATGTGCTTCTGCGTCTCCTTG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]