GgaEX0018898 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36818167-36821387:-
Coord C1 exon
chr7:36821283-36821387
Coord A exon
chr7:36820366-36820458
Coord C2 exon
chr7:36818167-36818259
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTGATTCTAAATGTTAAGATT
3' ss Score
2.31
5' ss Seq
TCGGTACAA
5' ss Score
2.47
Exon sequences
Seq C1 exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
Seq A exon
ATTTTGTATAAAGAAGATATTGGAACTGGAACTACTATTGAAAAGACGCCAGAGATGCAGAGAGTTAAAAGAACCCAGGATGCAATTAGCTCG
Seq C2 exon
ATTAAATACAAGGAGAGCATTGGAAAAGGAACTCCAATTCCTGATCTCCCAGAAGTGAAACGTGTCAAGGAGACGCAGAAGCACATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.645 C2=0.634
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
A:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(64.0=51.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGACCTACAGAACAGT
R:
ATGTGCTTCTGCGTCTCCTTG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]