BtaEX6009821 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44613602-44615854:+
Coord C1 exon
chr2:44613602-44613709
Coord A exon
chr2:44615216-44615527
Coord C2 exon
chr2:44615648-44615854
Length
312 bp
Sequences
Splice sites
3' ss Seq
TATTAACATTTTCTTCACAGTAT
3' ss Score
6.57
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAACTCTACAAACTTTCTTTGGAAGAGGCTAAAAAGAAAGGCTATGATCTCAGAACTGATGCAATTCCTATCAAAGCTGCCAAGGCCTCAAGAGATATTGCAAGTGAT
Seq A exon
TATAAATACAAACACAGTTATGAAAAGGAGAGGGGGAAGATGGTTGGTTTCCGCAGTCTTGAGGATGATCCCAAATTAGTTCATTCCATGCAAGTGGCCAAAATGCAATCTGACCGGGAGTACAAGAAAAACTATGAGAAGACCAAGACCAGCTACCACACCCCTGCCGACATGCTCAGTGTCACGGCCGCCAAGGATGCCCAAGCCAATATCACCAATACCAACTACAAGCACCTGATTCACAAGTATATTCTCCTCCCCGATGCCATGAACATCCAGCTGTCCAAGAATATGAATCGCATACAGAGTGAT
Seq C2 exon
AATGAATATAAGCAGGACTACAATGAATGGTACAAAGGGCTTGGCTGGAGTCCAGCTGGTTCCCTAGAAGTGGAAAAGGCCAAGAAAGCAACTGAATATGCCAGTGACCAGAAATACCGCCAGCATCCTAGCAACTTCCAGTTTACAAAGCTGAATGACTCCATGGACATGGTGCTTGCTAAGCAGAATGCCCATACCATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'49-54,'49-53,50-54=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.101
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
C2:
PF0088013=Nebulin=PD(37.9=15.9),PF0088013=Nebulin=PU(55.2=23.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACAAACTTTCTTTGGAAGAGGC
R:
TGTTCATGGTATGGGCATTCTGC
Band lengths:
310-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]