RnoEX6016800 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37792678-37794596:-
Coord C1 exon
chr3:37794489-37794596
Coord A exon
chr3:37793016-37793327
Coord C2 exon
chr3:37792678-37792884
Length
312 bp
Sequences
Splice sites
3' ss Seq
TATTCACATTTTCTTCACAGTAT
3' ss Score
6.79
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AAACTCTATAAACTTTCCCTGGAAGAATCTAGAAAGAAAGGCTATGACCTCAGAACAGATGCAATTCCTATCAAAGCTGCCAAGGCGTCGAGAGATATTGCAAGTGAT
Seq A exon
TATAAATACAAGCACAGTTATGAAAAGGAGAAAGGGAAGATGGTTGGTTTTCGCAGTCTGGAAGACGATCCCAAATTAGTCCATTCCATGCAAGTGGCTAAGATGCAGTCTGATCGAGAGTACAAGAAAAACTACGAGAAGACGAAGACCAGCTACCATACTCCTGCTGACATGCTGAGCGTCACGGCTGCCAAGGACGCGCAAGCCAACATCACCAACACCAACTACAAGCGCCTCATTCACAAGTACATCCTCCTCCCAGACGCAATGAACATCGAGCTGACCAGGAATATGAATCACATCCAGAGTGAT
Seq C2 exon
AACGAATATAAGCAAGACTACAGGGAGTGGTACCGAGGGCTTGGCTGGAGCCCAGCTGGCTCCCTAGAGGTGGAGAAGGCCAAGAAAGCAACTGAGTATGCCAGTGATCAGAAGTACCGGCAGCATCCTAGCAACTTCCAGTTTAAAAAGTTGACCGACTCCATGGACATGGTGTTGGCGAAGCAGAATGCTCATACCATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.279 C2=0.101
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(57.1=15.4)
C2:
PF0088013=Nebulin=PD(35.7=14.5),PF0088013=Nebulin=PU(55.2=23.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTATAAACTTTCCCTGGAAGAA
R:
TTATTCATGGTATGAGCATTCTGC
Band lengths:
312-624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]