MmuEX6101241 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52126491-52128487:-
Coord C1 exon
chr2:52128380-52128487
Coord A exon
chr2:52126819-52127130
Coord C2 exon
chr2:52126491-52126697
Length
312 bp
Sequences
Splice sites
3' ss Seq
TAATCACATTTTCTTCACAGTAT
3' ss Score
5.66
5' ss Seq
GACGTAAGA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AAACTCTATAAGCTCTCTCTGGAAGAATCTAGAAAGAAAGGCTATGACCTCAGAACGGATGCAATTCCTATCAAAGCTGCCAAAGCATCAAGAGATATTGCAAGTGAT
Seq A exon
TATAAATACAAGCACAGTTATGAAAAGGAGAAAGGAAAAATGGTTGGTTTTCGCAGTCTGGAGGATGATCCCAAATTAGTCCATTCCATGCAAGTGGCTAAGATGCAGTCTGATCGAGAGTACAAGAAAAACTATGAGAAGACGAAGACCAGCTACCATACTCCTGCCGACATGCTGAGCGTCACAGCAGCCAAGGATGCGCAAGCCAACATCACCAACACCAACTACAAGCGCCTCATTCACAAGTACATCCTCCTCCCAGACGCAATGAACATCGAGCTGACCAGGAACATGAATCACATTCAGAGTGAC
Seq C2 exon
AATGAATATAAGCAAGACTACAGGGAGTGGTACCGAGGGCTTGGCTGGAGCCCAGCTGGCTCCCTAGAGGTGGAGAAGGCCAAGAAAGCAACGGAATATGCCAGCGATCAGAAGTACCGGCAGCATCCCAGCACCTTCCAGTTTAAAAAGTTGACTGACTCCATGGACATGGTACTGGCGAAGCAGAATGCTCACACCATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'49-50,'49-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.124
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(57.1=15.4)
C2:
PF0088013=Nebulin=PD(35.7=14.5),PF0088013=Nebulin=PU(55.2=23.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTATAAGCTCTCTCTGGAAGA
R:
TTCATGGTGTGAGCATTCTGC
Band lengths:
310-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: