DreEX0049991 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23058067-23059813:-
Coord C1 exon
chr9:23059700-23059813
Coord A exon
chr9:23059407-23059604
Coord C2 exon
chr9:23058067-23058174
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGAATATTTTAACAGCGT
3' ss Score
4.77
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GTGAAATACAAGAAGGAATATGAGAAGAACAGAGGACAGATGGTCGGGGCCCTCAGTATCAAAGATGACCCCAAAATTATGCACTCAGTTCATGTTGCTAAGATCCAAAGCGAG
Seq A exon
CGTGAGTACAAGAAAGACTATGAGAAGATGAAGACCAAGTACCACGCTCCGCTGGACATGATGCTAGTGACTCTTGCTAAAAAATCTCAGGCCATTGCCAGCATGACTGGCTATAAGAAAATTATAAACCGTTACCTCCTGCCTTACGACAGCGTAGCTCTGGATCAAGCGAAGAAGTCCAATATGATCCAGAGTGAT
Seq C2 exon
AATGAATACAAGTTAGACTACAATAACTATGTCAAAGGATCACCTTGGGTGCCTTACGGCTCCTTGGAAGTTGAGAAATGCAAGAAAGCTGGACAGATCCTAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.028
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
A:
PF0088013=Nebulin=PD(37.9=16.7),PF0088013=Nebulin=PU(55.2=24.2)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(64.0=44.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATATGAGAAGAACAGAGGACA
R:
GGATCTGTCCAGCTTTCTTGCA
Band lengths:
202-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]