MmuEX6033772 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56435602-56438517:-
Coord C1 exon
chr19:56438416-56438517
Coord A exon
chr19:56436144-56436341
Coord C2 exon
chr19:56435602-56435706
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTGTTGCATTCAAGGTT
3' ss Score
8.47
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTAAATACAAAGAAGAATATGAGAAAATGAAGGGCAGAGCCCTGGGAGCCACAGACTCTAAGCTTCTGCATTCTCTGCAGGTGGCCAAGATGAGCAGCGAG
Seq A exon
GTTGAATATAAGAAAGGGTTTGAGGAGAGTAAAACCCACTTTAACCTGCCCATGGACATGGTGAACCTCAGGCACGCTAAGAAGGCCCAAGCTCTTGCCAGTGACCTTGACTACAGAAAGAAACTGCATGACTACACGGTGCTGCCTGAAGATATGAAAACTCAGTGGGCCAAGAAAGCCTACGGGCTGCAGAGCGAG
Seq C2 exon
CTGCAGTACAAAGCTGACCTGGCATGGATGAGGGGAGTCGGGTGGCTGACAGAGGGGAGTCTCAACCTGGAACAGGCGAAGAAGGCTGGACAGCTCATCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'17-20,'17-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.008 C2=0.045
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(53.6=44.1)
A:
PF0088013=Nebulin=PD(39.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATATGAGAAAATGAAGGGCAGA
R:
CTCGCTGATGAGCTGTCCAG
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: