BtaEX6100916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34381740-34384140:-
Coord C1 exon
chr26:34384039-34384140
Coord A exon
chr26:34382433-34382630
Coord C2 exon
chr26:34381740-34381844
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGGTGCCTTCAAGGTT
3' ss Score
8.26
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATTAAATACAAAGAGGAGTATGAAAAAGCAAAAGGCAAAGTCCTAGGAACCACAGACTCGAGGCTGCTGCACTCCCTTCAGGTTGCCAAGATGAGCAGTGAG
Seq A exon
GTTGAATACAAGAAAGGCTTTGAAAAGAGTAAGACCCACTTTCACCTGCCCATGGACATGGTCAACATCAGGCATGCTAAGAAGGCCCAAGCTCTGGCCAGTGACCTGGACTACAGGAAAAGACTGCACGAATACACTGTGCTGCCCGAAGATATGAAGACTCTCTGGGCCAAGAAAGCCTACGGGCTCCAGAGCGAG
Seq C2 exon
CTGCAGTACAAGGCTGACCTGGCGTGGATGAAAGGGGTCAGGTGGCTGACTGAGGGCAGTCTCAACTTGGAACAGGCCAAGAAGGCTGGACAGCTGGTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(50.0=38.2)
A:
PF0088013=Nebulin=PD(42.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACAAAGAGGAGTATGAAAAAGCA
R:
TTGGCCTGTTCCAAGTTGAGAC
Band lengths:
178-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]