RnoEX6007852 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277146887-277151026:-
Coord C1 exon
chr1:277150925-277151026
Coord A exon
chr1:277147321-277147518
Coord C2 exon
chr1:277146887-277146991
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCGGTTTCTTGCATTCAAGGTG
3' ss Score
7.5
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTAAATACAAAGAAGAGTATGAGAAAACAAAGGGCAGAGTCCTGGGAACCACCGACTCCAAGCTTCTGCATTCTCTGCAGGTGGCCAAGATGAGCAGCGAG
Seq A exon
GTGGAATATAAGAAAGGGTTTGAGGAGAGTAAAACCCACTTCCACTTGCCCATGGACATGGTGAACCTCAGGCATGCTAAGAAGGCCCAGGCCCTCGCCAGCGACCTCGACTACAGAAAGAAACTGCATGACTACACAGTGCTGCCTGAAGATCTGAAAACTCAGTGGGCCAAGAAAGCCCACGGGCTCCAGAGTGAG
Seq C2 exon
CTGCAGTACAAAGCTGACCTGGCATGGATGAAGGGTGTCGGGTGGCTGACGGAGGGGAGTCTCAACCTGGAGCAGGCGAAGAAGGCTGGACAGCTCGTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(53.6=44.1)
A:
PF0088013=Nebulin=PD(39.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGAGTATGAGAAAACAAAGGG
R:
CTGTCCAGCCTTCTTCGCCT
Band lengths:
186-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]