GgaEX6041028 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28939646-28940704:-
Coord C1 exon
chr6:28940583-28940704
Coord A exon
chr6:28939974-28940171
Coord C2 exon
chr6:28939646-28939750
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTACTTTTTCTAGATT
3' ss Score
9.12
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
TTTTATTATTTTTTTTACAGATTAAGTATAAAGAAGAATATGAAAAAACAAAAGGGAAAGCAATTGAAACAAAAGATTCAAGACTTTTGCACTCTCTGCAGGTGGCCAAGATGAGTAGTGAG
Seq A exon
ATTGCCTACAAAAAAGATTTTGAGGAGAGTAAGACCCATTTCCATCTGCCTATGGACATGGTAAACCTGAGGCATGCTAAGAAGGCCCAAGCACTAGCTAGCGACTTGGATTATAGAAAGAGACTCCATGAATACACAGTGGTTCCGGAAGATTTGAAGACAAAATGGGCCAAGAAGGCCTATGGGCTCCAGAGTGAT
Seq C2 exon
CTTCAATACAGGGAAGACCTGATGTGGATGAAAGGAGTTGGATGTATCACAGAAGGAAGTCTTAACATACAGCAAGCCAAAAAGGCAGGAGATTTGGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(50.0=38.2)
A:
PF0088013=Nebulin=PD(42.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGGAAAGCAATTGAAACA
R:
TCACTGACCAAATCTCCTGCC
Band lengths:
179-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]