BtaEX6009846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44552157-44555005:+
Coord C1 exon
chr2:44552157-44552357
Coord A exon
chr2:44554232-44554339
Coord C2 exon
chr2:44554901-44555005
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAATCTGATGTCTTTTTTAGAAT
3' ss Score
9.27
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ACAAGAACAAGATTCTATGAAACTACGACAACAAGGACATCTGACTATGAGCAATCAGAAACCTCCAGACCGGCCCTGGCACAGCCAGTACCTGAAAAGCCGGTGGAGAGGAAGAGGGTTATTCGAAAGAAGGTGGACCCTTCAAAGTTCATGACCCCCTACATTGCACACAGTCAGAAAATGCAGAATCTCTTTAGCACA
Seq A exon
AATAAATACAAGGAGAACTATGAGAAAGCAAAAGGGAAGCCATACGCCATCACAACCGATACCCCAGAACTTCGCAGAATCAAGAAAGTTCAAGATCAACTCAGTGAG
Seq C2 exon
GTTAAGTATCGAGTGGATGGCGATGTTGCTAAAACTATTTGTCACGTCGACGAAAAAGCAAAGGACATTGAACATGCAAAGAAAGTGTCGCAGCAAGTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.444 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=23.9)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(57.1=44.4)
C2:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(53.6=42.9)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAGAAACCTCCAGACCGG
R:
ACTGACTTGCTGCGACACTTT
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]