RnoEX6016770 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37846776-37849292:-
Coord C1 exon
chr3:37849092-37849292
Coord A exon
chr3:37847322-37847429
Coord C2 exon
chr3:37846776-37846880
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATATCTAATATTCTTTTCAGAAT
3' ss Score
7.69
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ACAATTACAGAAATCTATGAAACCACAACTACAAGGACATCTGACTATGACCAATCAGAAACTTCCACACCAGCGCTGGCACAGCCACAACCAGCAAAACCGGTGGAGCGGAAGAAGGTCATTCGAAAGAAGGTGGACACGTCCAAGTTCATGACCCCCTACATAGAGCACAGTCAGAAAATGCAGGGTCTTTTCAGCCCA
Seq A exon
AATAAATACAAAGAGAACTACGAGAAAGCAAAGGGACAGCCATACGCCATCACAAGTGATACTCCAGAACTTCGCAGAATCAAGAAAGTCCAGGATCAACTCAGTGAG
Seq C2 exon
GTTAAGTATCGAATGGATGGAGACGTTGCTAAAACTATCTGTCATGTGGACGAAAAAGCCAAAGATATTGAACATGCTAAGAAAGTGTCGCAGCAAGTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
86%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.444 C2=0.029
Domain overlap (PFAM):
C1:
PF093165=Cmyb_C=PU(38.8=92.5),PF0088013=Nebulin=PU(55.2=23.9)
A:
PF093165=Cmyb_C=FE(21.9=100),PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF093165=Cmyb_C=FE(21.2=100),PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAACTTCCACACCAGCG
R:
TGCTGCGACACTTTCTTAGCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]