GgaEX6043239 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:34781849-34783991:-
Coord C1 exon
chr7:34783788-34783991
Coord A exon
chr7:34782716-34782823
Coord C2 exon
chr7:34781849-34781953
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTCATTATTTTCTTTCAGAAC
3' ss Score
9.9
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTGGTCACTGAGATCACTGACAGCACTAGCACAGAATTCACAGGTCCTACAACCATCACCCGTACGATTGAGTATGAAAAAACTTCTGGTGAGGGTGCAGCAACTCCAGTCAGGAAGAAGACGATACGGACAAAAATGGACACTTCCAAGTTCTTGACACCTTACCTGCAGCACAGTAATAAAATGAAGGACCTGTTCAGTGAG
Seq A exon
AACAAGTACAAAGAAAAATTTAATAAGGAAAGAGGAAAGCCATATGCTTCCACAATTGATACCCCAGAAATCCGGAGAATCAAGAAAGTGCAAGAGCAGCTCAGTGAG
Seq C2 exon
GTTAAATACCGCATGGCTGGTGAAGCTGCTCGAACTATTTGCCATGTTGATGAAAAGGCTTGGGATATAGAACATGCAAAGAAGGTATCTCAGCAAGTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028654-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(53.6=22.1)
A:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(50.0=37.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACTGAGATCACTGACAGC
R:
TGGCAAATAGTTCGAGCAGCT
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]