BtaEX6009954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53910041-53914044:-
Coord C1 exon
chr2:53913973-53914044
Coord A exon
chr2:53912723-53912797
Coord C2 exon
chr2:53910041-53910187
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATCATCTTTCTTTTCCAGTAT
3' ss Score
8.18
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
TTATCATTTTTCAAGCCTACACCCAAACGGTATAAAATTCTCCTAGAAGCCAAAGCCTTCCCTTCAGATCAT
Seq A exon
TATGCTGTTGAGTCACAGCTTCAACTTCATGGACTTAACATTGAGAAAAGTATGCGGATTATAAAGCCAAGAGAG
Seq C2 exon
GGGGAAGACACATTGAGATTAGAGGATATCCTTGAAGTAATTGAGAATGAAGGTGACTCTATTGCAGTGATCCTTTTCAGTGGTCTGCATTTTTATACCGGACAGCTCTTTAATATACCTGCCATCACAAAAGCAGGACAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(6.9=100)
A:
PF0026614=Aminotran_5=FE(7.2=100)
C2:
PF0026614=Aminotran_5=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAAAGCCTTCCCTTCA
R:
TGTCCTGCTTTTGTGATGGCA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]