RnoEX6016706 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28470648-28474769:+
Coord C1 exon
chr3:28470648-28470719
Coord A exon
chr3:28472190-28472264
Coord C2 exon
chr3:28474623-28474769
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGATTTTCTTTCTTTTTCAGTAT
3' ss Score
9.43
5' ss Seq
GAGGTATCT
5' ss Score
7.27
Exon sequences
Seq C1 exon
TTATCATTCTTTAAGCCTACACCAAAGCGGCACAAAATTCTTCTAGAAGCCAAAGCCTTCCCTTCTGATCAT
Seq A exon
TATGCGATCGAGTCACAGATTCAACTTCATGGACTTGATGTTGAGAAAAGTATGCGGATGATAAAGCCACGAGAG
Seq C2 exon
GGGGAAGAGACCTTAAGAATGGAGGACATACTGGAAGTAATTGAGAAGGAAGGAGACTCAATTGCTGTGGTCCTGTTCAGTGGCCTGCACTTTTATACTGGACAGCTGTTCAACATTCCTGCCATTACACAAGCCGGACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(6.8=100)
A:
PF0026614=Aminotran_5=FE(7.1=100)
C2:
PF0026614=Aminotran_5=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAAGCCTTCCCTTCTG
R:
TTGCATGTCCGGCTTGTGTAA
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]