GgaEX0018786 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32165742-32168758:+
Coord C1 exon
chr7:32165742-32165813
Coord A exon
chr7:32167213-32167287
Coord C2 exon
chr7:32168612-32168758
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGCATGAAAATCTCTTGCAGTAT
3' ss Score
4.49
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
CTATCTTTCTTTAAGCCTACTCCGAGACGCTATAAAATTCTTCTAGAAGCCAAAGCCTTTCCCTCTGACCAT
Seq A exon
TATGCTGTTGAGTCCCAGCTTCGATTTCATGGACTCGATGTGGAGAAAAGCATGCTCATGCTGCGGCCACGGGAG
Seq C2 exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418_MULTIEX2-4/13=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(12.8=100)
A:
PF0026614=Aminotran_5=FE(13.4=100)
C2:
PF0026614=Aminotran_5=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGCCTACTCCGAGACGCT
R:
TAGGGATGTCAAACAGCTGGC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]