BtaEX6010411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:85001808-85006915:-
Coord C1 exon
chr2:85006853-85006915
Coord A exon
chr2:85001873-85001917
Coord C2 exon
chr2:85001808-85001871
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTAAAATTTCATATTTCAGGTG
3' ss Score
8.92
5' ss Seq
CATTTTGAA
5' ss Score
-27.35
Exon sequences
Seq C1 exon
GATAAATCAGCCAGCAAAGAAAAACCTAAGACACCAGGAAGAATTTTACCACAATTGGCTACG
Seq A exon
GTGAGTACAAAGCCCCAGTGGCAGCAGGCAGCTCCATCGTTCCAT
Seq C2 exon
TTGAATGTAAAGCAGGATGAAGATATTCCAGAGCAGTTTAGTGTTAAAAATGAACAGTCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCAGCAAAGAAAAACCT
R:
ACTGTTCATTTTTAACACTAAACTGC
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]