HsaEX6017547 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196912076-196915973:-
Coord C1 exon
chr2:196915911-196915973
Coord A exon
chr2:196913020-196913128
Coord C2 exon
chr2:196912076-196912223
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTTAAATTTTGTATTTTAGGTG
3' ss Score
10.65
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAAATTAGCCAGCAAAGAAAAGTTCAAGGCACCAGCAAGAGCTTTACCACAGCTGTCTATG
Seq A exon
GTGAGTACAAAGCCCCACTGGCAGCAGGCAGCTCCATCATTCCATTTGAGTGTAAAGCAGGATGATGAGAGTCCAGAACCATTTAGTGTTAAAAATGAACAGTCCCATG
Seq C2 exon
CTGAATACATGGAACGTTTTGGAAAAAAGGGCAAATTACCCCACCAAGTTGATGATAGTTATGTTGGACCATCTACTTCCAAATCAAAGGGCAAATCTCCACATAAAGAACGAGAAAACTTTAGAAGTACTCTTGTTAATGTCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.973 C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGCCAGCAAAGAAAAGTTCAAGG
R:
ACAAGAGTACTTCTAAAGTTTTCTCG
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)