HsaEX6017547 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196047352-196051249:-
Coord C1 exon
chr2:196051187-196051249
Coord A exon
chr2:196048296-196048404
Coord C2 exon
chr2:196047352-196047499
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTTAAATTTTGTATTTTAGGTG
3' ss Score
10.65
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GAGAAATTAGCCAGCAAAGAAAAGTTCAAGGCACCAGCAAGAGCTTTACCACAGCTGTCTATG
Seq A exon
GTGAGTACAAAGCCCCACTGGCAGCAGGCAGCTCCATCATTCCATTTGAGTGTAAAGCAGGATGATGAGAGTCCAGAACCATTTAGTGTTAAAAATGAACAGTCCCATG
Seq C2 exon
CTGAATACATGGAACGTTTTGGAAAAAAGGGCAAATTACCCCACCAAGTTGATGATAGTTATGTTGGACCATCTACTTCCAAATCAAAGGGCAAATCTCCACATAAAGAACGAGAAAACTTTAGAAGTACTCTTGTTAATGTCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.973 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGCCAGCAAAGAAAAGTTCAAGG
R:
ACAAGAGTACTTCTAAAGTTTTCTCG
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains