RnoEX0003842 @ rn6
Exon Skipping
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59581983-59584534:-
Coord C1 exon
chr9:59584472-59584534
Coord A exon
chr9:59583424-59583529
Coord C2 exon
chr9:59581983-59582130
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACTTAAATTTTCTATTTTAGACA
3' ss Score
9.56
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GACAAACCATCCAGTAAAGAAAAGGCCAAGACGCCGACAAGAGCTTTACCACAGTTAACTTTG
Seq A exon
ACAGGGGTCAAGCCCCAGTGGCAGCAGACTGCTCCATCATTCCATTTAAATGTCAAACAGGAAAACCCGATAGAACCCTATAATGTTAAAAATGAGCAGTCATATG
Seq C2 exon
CTGAATACATGGAGCACTTTGGAAAAAAAGGCAAATTACTGGACCAAATTGATGATACCCGTTCTGCACCATCAACTTCCAGATCAAAGGTCAAATCTCCACATAAGGAGAGAGAGAATTTCAGAAGCACCCTCGTCAACGTCATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAACCATCCAGTAAAGAAAAGGC
R:
TAATGACGTTGACGAGGGTGC
Band lengths:
210-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]