BtaEX6010415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84983512-84987845:-
Coord C1 exon
chr2:84987665-84987845
Coord A exon
chr2:84985417-84985492
Coord C2 exon
chr2:84983512-84983637
Length
76 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCAATTTTCTTTTAGTTG
3' ss Score
8.88
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
Exon sequences
Seq C1 exon
AGATATTACTATTATATCCACCATGGAATTGATACGGACCATGTAGCACCAATGGAAGATTCTTGGCTGGAGCATGTATTGAATTTAGTCCCCCAGCATCTGAAAGTCCTCACTAACAGCATACTTGCATTGTCTGATGAAATGAGAGAAGATTATCTTCTTAGTGTAAAAAAATCCATAG
Seq A exon
TTGATTTTGTTTTGAAAGATCCTAGAGAAAAGGAAGATGACAAAAAGGTAGAAGAACTTCCACCCCATCGTGCTGA
Seq C2 exon
GATGGAAATTCTTCCAAAGCCTTGGAGGAAATCATTTTTAGCTGCAAGCACTTATATTCGGGATCACTTGAATGCAATGAACCCTACAATGTTGTCGGTGCTAGATTTGTGGCACAGTACTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.462 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCCCAGCATCTGAAAGT
R:
TCATTGCATTCAAGTGATCCCGA
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]