RnoEX6039676 @ rn6
Exon Skipping
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59567911-59574612:-
Coord C1 exon
chr9:59574432-59574612
Coord A exon
chr9:59571689-59571764
Coord C2 exon
chr9:59567911-59568036
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTTCAATTTTTTTCTTAGTTG
3' ss Score
7.69
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AGATATTACTATTACATCCATCATGGAATCGATACTGATAACGTGGCCCCGATGGAGGACTCCTGGCTGGAGCACGTGTTGCAGTTGGTTCCACAGCATCTGAAAGTCCTGACTAACAGCATCACGGTCTTGTCGGATGAGATGAGAGAGGATTACCTTCTTAGTGTGAAGAAGTCCATAG
Seq A exon
TTGATTTTGTTTTAAAAGATCCCAGAGAAAAAGAGGATGATACCAAGATAACTGAACTCCCTCCACACCGCGCTGA
Seq C2 exon
AATGGAAGTCTTGCCAAAGCCGTGGAGGAGGTCTTTCCTATCTGCATGTAGTTATATTAGGGACCACTTGAACGCTATGAACCCCACTATGCTGGCTGTGCTGGATCTGTGGCACAGCACTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGGTCTTGTCGGATGAGA
R:
GATCCAGCACAGCCAGCATAG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]