MmuEX0015037 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46156263-46173139:+
Coord C1 exon
chr1:46156263-46156443
Coord A exon
chr1:46166110-46166185
Coord C2 exon
chr1:46173014-46173139
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTTCAATTTTTTTCTTAGTTG
3' ss Score
7.69
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AGGTATTACTACTACATTCGCCATGGACTTGATACTGATCACGTGGCCCCAATGGAAGACTCTTGGTTGGAGCACGTATTACAATTGGTTCCGCAGCATCTGAAAATCCTGAATAATAGCATCATGGTCTTGTCCGATGAGATAAGAGAAGATTATCTTCTTAGTGTAAAGAAATCCATAG
Seq A exon
TTGACTTTGTTTTAAAAGATCCCAGAAAAAAAGACGATGATGGCAAGATAACTGAACTCCCACCTCACCGTGCTGA
Seq C2 exon
AATGGAAGTCTTGCCAAAGCCATGGAGGAGGTCTTTTCTATCTGCATGCAGTTACATTAGGGATCACTTGAATGCAATGAACCCTATGATGCTGGCTGTGCTGGATCTGTGGCATAGCACTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.346 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCAATGGAAGACTCTTG
R:
CTCCTCCATGGCTTTGGCAAG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: