GgaEX1020225 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9271312-9273997:-
Coord C1 exon
chr7:9273817-9273997
Coord A exon
chr7:9273350-9273425
Coord C2 exon
chr7:9271312-9271437
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTTAAACACCGTTCTTAGTTG
3' ss Score
4.06
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
AAATACTACTATTACATTCGCCATGGAATTGATACAGCAAACGTAGCTCCACTGGATGAAGCCTGGCTAGATCACGTTTTAGTTTTAATTCCACAGCATCTGAAATCATTTGATGAAAGCATACGTTCACTGACTGATGAAATGAAAGAAGACTATCTTCTGAGTGTAAAAAAGGCTATAG
Seq A exon
TTGACTTTGTTTTAAGAGACCCCAGAGAAAAAGATGAAGACAAGAAGAAACATTCTCTTCTACCTCACCGTGCAGA
Seq C2 exon
AATGGAAGTAGTCCCAAAACCTTGGAGAAAGTCTTTCATGTCAGCATACAGTTACATGAAAGAAAACCTGCATGCAATAAATCCTTCAATGCTAGCTGTTCTGAAGCTCTGGGAGACTTCATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATACGTTCACTGACTGATGA
R:
TCCCAGAGCTTCAGAACAGCT
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]