BtaEX6010417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84972630-84983637:-
Coord C1 exon
chr2:84983512-84983637
Coord A exon
chr2:84975868-84975987
Coord C2 exon
chr2:84972630-84972813
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACATCTCTTGCAGAAA
3' ss Score
8.53
5' ss Seq
AATGTAAAG
5' ss Score
0.58
Exon sequences
Seq C1 exon
GATGGAAATTCTTCCAAAGCCTTGGAGGAAATCATTTTTAGCTGCAAGCACTTATATTCGGGATCACTTGAATGCAATGAACCCTACAATGTTGTCGGTGCTAGATTTGTGGCACAGTACTTTTAA
Seq A exon
AAAGTTACGGTTAGTTGATATAGAAGAATTTCACAATCGTCAGGATGCATTGGAGCTGTCAACTTTTCAGACAATTGTCATGAAACACATGGAATCTGCCAAAGAGACTCTACTGAAAAT
Seq C2 exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGTAATAAAAAAAAACTATTGCCAACTGGTGACAGCAGTGCCAAAATGGAATCTTTTTTCAACTGTGCTGCTACACTTATGACTTTACAGCTGCAGGAACTCGCTTTGGTTTCCATGCAAGATTACACAGACTTAATTGCACAACCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGCACTTATATTCGGG
R:
TCTTGCATGGAAACCAAAGCG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]