GgaEX7005838 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9267328-9271437:-
Coord C1 exon
chr7:9271312-9271437
Coord A exon
chr7:9269858-9269977
Coord C2 exon
chr7:9267328-9267511
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATGTTATATTCTGTTTCAGAAA
3' ss Score
10.54
5' ss Seq
GAAGTATGA
5' ss Score
3.33
Exon sequences
Seq C1 exon
AATGGAAGTAGTCCCAAAACCTTGGAGAAAGTCTTTCATGTCAGCATACAGTTACATGAAAGAAAACCTGCATGCAATAAATCCTTCAATGCTAGCTGTTCTGAAGCTCTGGGAGACTTCATTTAA
Seq A exon
AAATTTACGCCTTCTTGACACAGATCTGTTTCACAATAAACAGGAAGCTGAGGAACTTGCATCTTTCCAGATTAAAGTCATCCAGGAAATTGGAAAATCCAAAGCTGTTCTATCTAGGAA
Seq C2 exon
GTGGCTTCCAGAAGTGCAGAAAATCTTTTACCAAAGTAATAAAAAAAAGCAAATACCCAGTTATACCAGCACTGCTAAATTAGAGGCTTTCTTCAGATGTGCTGCCACTTTAATGACCCGTCAACTGCAACAATTACTTTTACAATCAATTCAGGACTTCACAGATTTAATTGTTCAACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGAGAAAGTCTTTCATGTCA
R:
ATTGTTGCAGTTGACGGGTCA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]