MmuEX7000175 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53635994-53643566:-
Coord C1 exon
chr1:53643441-53643566
Coord A exon
chr1:53640336-53640455
Coord C2 exon
chr1:53635994-53636177
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTATCTCTTGCAGGAA
3' ss Score
12.04
5' ss Seq
AACGTAACG
5' ss Score
4.99
Exon sequences
Seq C1 exon
AATGGAAGTCTTGCCAAAGCCATGGAGGAGGTCTTTCCTATCTGCATGCAGTTACATTAGGGATCACTTGAATGCAATGAACCCAATGATGCTGGCCGTGCTAGATCTGTGGCATAGCACTTTTAA
Seq A exon
GAAATTACGTTTAGTTGACATAGAAGAGTTTCACAGCTGCCAGGATGCATTAGAGCTGTCAGAATTTCAGAACATTGTCATTAAACACATGGAATCTGCCAAGGAGACGCTACTTAAAAC
Seq C2 exon
GTGGTTTCCAGAAGTGCAGAATATTTTTAACCAAGGCAATAAAAAAAAGCAATTGCCAACTGGCAAGAGCACTGCCAAATTGGACTCTTTTTTCAACTGCGCTGCTACACTCATGACCTTACAGCTGCAGGACCTCATTCTTGTCTCCATGCAAGACTTCACAGACCTCATCGCCCAACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141-'11-18,'11-17,12-18=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTGCCAAAGCCATGGAG
R:
TGAGGTCCTGCAGCTGTAAGG
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types