HsaEX6017553 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196001675-196019295:-
Coord C1 exon
chr2:196019170-196019295
Coord A exon
chr2:196012787-196012906
Coord C2 exon
chr2:196001675-196001858
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTATCTTTTGCAGAAA
3' ss Score
10.94
5' ss Seq
AATGTAAAG
5' ss Score
0.58
Exon sequences
Seq C1 exon
AATGGAAATTCTGCCAAAACCTTGGAGGAAATCTTTTTTAGCTGCAAGCAGTTATATTAGGGATCACTTGAATGCAATGAACCCCACAATGCTGGCTGTACTAGATTTGTGGCACACTAATTTTAA
Seq A exon
AAAATTACGTTTAGTTGATATCAAAGAATTTCATAATTGCCAGGATGCATTAGAGCTGTCAAGTTTTCAGAACATTATCATGAGACACATGGACTCTGCCAAAGAGACTCTACTTAAAAT
Seq C2 exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGTAATAAAAAAAAGCAATTGCCAACTGGTGACAGCAGTGCCAAATTGGAATCTTTTTTCAACTGTGCTGCTGCACTTATGACTTTACAGCTGCAGGACCTCACTTTAGTCTCCATGCAAGATTTCACGGACTTAATTGCACAACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'17-19,'17-16,19-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000312428fB14003
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTGAATGCAATGAACCCCA
R:
TGGGGGTTGTGCAATTAAGTCC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains