HsaEX6017554 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196000704-196012906:-
Coord C1 exon
chr2:196012787-196012906
Coord A exon
chr2:196001675-196001858
Coord C2 exon
chr2:196000704-196000883
Length
184 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTTTGTTCTTTCAAGGTG
3' ss Score
8.06
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AAAATTACGTTTAGTTGATATCAAAGAATTTCATAATTGCCAGGATGCATTAGAGCTGTCAAGTTTTCAGAACATTATCATGAGACACATGGACTCTGCCAAAGAGACTCTACTTAAAAT
Seq A exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGTAATAAAAAAAAGCAATTGCCAACTGGTGACAGCAGTGCCAAATTGGAATCTTTTTTCAACTGTGCTGCTGCACTTATGACTTTACAGCTGCAGGACCTCACTTTAGTCTCCATGCAAGATTTCACGGACTTAATTGCACAACCCCCA
Seq C2 exon
GATTCTGTTAGAGCTTTTGAACATCCAGGTTTCATCATGAGGCTGATTCTTGATAATGACACCATTAAGTTTGAACCTGAGTTGAGTGACTATATAGATATCTTTCTAAATGTTTATGACGTCATGATTAAAGCTGTCAGTTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'19-20,'19-19,22-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGATGCATTAGAGCTGT
R:
TTTGTCTCAACTCTTGGCACA
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains