BtaEX6010418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84971848-84975987:-
Coord C1 exon
chr2:84975868-84975987
Coord A exon
chr2:84972630-84972813
Coord C2 exon
chr2:84971848-84972027
Length
184 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTTTGTTCTTTGAAGGTG
3' ss Score
7.59
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AAAGTTACGGTTAGTTGATATAGAAGAATTTCACAATCGTCAGGATGCATTGGAGCTGTCAACTTTTCAGACAATTGTCATGAAACACATGGAATCTGCCAAAGAGACTCTACTGAAAAT
Seq A exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGTAATAAAAAAAAACTATTGCCAACTGGTGACAGCAGTGCCAAAATGGAATCTTTTTTCAACTGTGCTGCTACACTTATGACTTTACAGCTGCAGGAACTCGCTTTGGTTTCCATGCAAGATTACACAGACTTAATTGCACAACCTCCA
Seq C2 exon
GATTCTGTTAGGGCCTTTGAACATCCAGGTTTTGTCATGAGGCTGATTCTTGATAACGACACCATTAAGTTTGAACCTGATTTCAATGATTATACAGACATCCTTCTAAATGTTTATGATGTCATGATTAAGGCTGTAAATTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTCAGGATGCATTGGAGC
R:
TTTGTCTCAACTCTTGGCACA
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]